Keep positive topology differences separate from unpaired neighbor identity. Preserve exact content pairing and source observations, report unresolved relationships without inventing incomplete inventory, and omit comparison edges when no substantive difference was observed.
Validated with 45 focused domain/CLI/MCP tests, nine expanded domain controls, check:fast, and docs:check. Clean baseline fails seven controls and passes two positive controls. Controlled static fixtures only; no target execution or large-bundle profiling.
Refs #4681
Keep location-only matched pairs unchanged under complete coverage while retaining both coordinates and location dimensions. Preserve incomplete coverage as unknown and retain definite content, property, and relationship changes.
Validated with focused domain, compiled CLI and MCP workflows, static checks and docs checks. A tiny public CLI bundle fixture reproduces the issue; the reported Bitwarden releases were not rerun.
Refs #4520
Expose exact-path, selected-property, paged reads of retained JavaScript application facts through the shared CLI/MCP analysis view. Preserve original identities, complete row Evidence and partial coverage; retain reproducible real-Joplin and actual-agent measurements, including negative cost results.
Fixes#4190. Part of #4027. Code mode remains deferred by #4091.
Integrate main after #4274. Validation: 114 distinct focused cases across documented invocations, 106 Python cases, full static/docs checks and 18 version-labelled real-application workflows with 9 complete CLI/MCP view parity controls. Preserve two local fixture deadline failures and the unchanged test passing on an available single CPU. Final-head CI passed all 36 jobs after one Windows timeout retry without source changes; both exact-head automated reviews are clear and all review threads resolved. Downloadable apps and raw large Evidence/transcripts are excluded.
Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>
Preserve incoming callback uncertainty and resolve proven preceding writes.
Share read-position and initializer identity facts with returned-reference
analysis; cache completed projected work with actual cycle dependencies.
Fixes#3880
Resolve stable lexical and URL targets using shared effects, and preserve unresolved request expressions as partial facts. Carry their uncertainty through workers, artifact graphs, and the CLI. Scope partial endpoint identity to the source site.
Refs: #3451, #3534
Co-authored-by: Hemang Varshney <218273197+hemv-857@users.noreply.github.com>
Select binding facts at reads without mixing whole-binding and temporal values. Share conditional activation rules, preserve partial expression order, and bound immutable ancestry work. Memoize temporal results within each query using initializer identity, capture point, budget and dependency proofs; preserve depth limits and source Evidence.
Fixes#3881
Require the native node owner's content digest instead of borrowing an
observation artifact digest, which can identify the containing ASAR. Keep
unavailable nodes and their path/provenance/partial facts in the trace,
without a false actionable target or native Evidence link. Remove the old
fallback and allocate the query index only for eligible native targets.
Verify real public CLI/stdio MCP workflows, known/missing companion inputs
and shipped Joplin controls. Preserve reproducible scripts, source pins and
compact correctness/resource/token records without archiving applications.
Fixes#3926. Part of #4027.
Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>
Fixes#3933. Part of #4027.
Normalize exact literals and configuration defaults through the shared primitive owner. Preserve tagged limits through member/destructuring projection and record encountered bounds in per-analysis state independently of later selected values. Remove the retained-value rescan and duplicate default reader. Preserve source Evidence, bounded/null values, aggregate wire capacity and complete endpoint lookup identities for query/trace/comparison.
Validated 66 focused and 932 semantic tests on the restored identical runtime; final public selection 7/7 adds an augmented large-endpoint acceptance (67 distinct focused cases across invocations). Full static/docs and fresh real Obsidian controls passed. Compact measurements and rejected attempts remain recorded.
Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>
Expose filtered canonical module identities, retained source-range counts and mixed support through the existing shared CLI/MCP analysis view. Preserve full-item access, source selection, provenance and partial coverage while allocating only the selected page.
Verify exact facts and CLI/MCP identity on shipped Obsidian, record complete-task BPE/resource measurements and reuse owned-process supervision for optional tokenizer cleanup.
Fixes#4092
Part of #4027; decision #4091.
Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>
Preserve uncertainty in offline passive network comparisons when request
identity, metadata, or per-kind inventory coverage is incomplete. Retain
proven HTTP/WebSocket changes without using missing information to infer
membership, duplicate counts, or equality.
Compare redirect resource types only where both observations retain them.
Keep metadata completeness with its owner, stream HTTP content digests,
and require full coverage for multiplicity and WebSocket stream inventories.
Preserve independently known metadata changes and full-inventory counts.
Keep the original JavaScript configuration-escape, JSON, cancellation,
SAZ and schema-documentation fixes compatible with current main. Split
public CLI comparisons into isolated test cases without loosening timeouts.
Validate actual Chromium/HTTP captures through CLI and real stdio SDK,
with explicit limits and unchanged source bytes.
Co-authored-by: To3akaRin <131595336+To3akaRin@users.noreply.github.com>
Co-authored-by: N0zoM1z0 <161784452+N0zoM1z0@users.noreply.github.com>
Co-authored-by: Kaoru0822 <208281322+kaoru0822-kitauji@users.noreply.github.com>
Co-authored-by: gensokyo-dev <342580529+gensokyo-dev@users.noreply.github.com>
Retain directive literal values, including escaped strict-mode lookalikes, in semantic function fingerprints. Verify normalized duplicates and distinct directives through CLI/MCP.
Co-authored-by: To3akaRin <131595336+To3akaRin@users.noreply.github.com>
- CONTRIBUTING: CLI logs go to stderr, not stdout. `createLogger` writes every
mode to fd 2 so protocol and `--json` stdout stay parseable.
- Get started: Ghidra supports Linux arm64 (`GhidraInstallation` maps
`linux.arm64`), as installation.md already states.
- Browser guide: drop the caption claiming the hosted request path carries a
`/rea/` prefix. The guide now targets rea.tools, where the example is served
at `/examples/notes-web/`, as the evidence table above it shows.
- JavaScript workflows: six CLI commands accept inline JSON or a JSON file,
not five; `inspect-analysis-view` was added after the sentence was written.
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
Co-authored-by: morluto <76467478+morluto@users.noreply.github.com>
Share the canonical string identity rule with endpoint projection, scope event keys to each emitter, and keep complete event/listener names in properties. Verify real CLI and stdio MCP with large names, registration/removal, distinct emitters, exact name seeds, reserved-prefix values, and unresolved dynamic names.
BREAKING CHANGE: New analyses use digest-based IDs for long or reserved-prefix event names and shorter event/listener display labels. Select IDs from the parent graph and read exact names from event_name properties. Stored graphs and their original IDs remain accepted for semantic tracing.
Keep exact endpoint observations and request properties while using compact display labels and collision-safe canonical value digests for long artifact-local endpoint keys. Verify real CLI/stdio MCP tracing and version comparison without truncating evidence.
BREAKING CHANGE: New analyses use compact endpoint labels and digest-based IDs for long or reserved-prefix endpoint keys. Select IDs from the parent graph and read full values from endpoint properties. Previously stored graphs retain their original identities and remain valid workflow inputs.
Choose the shorter complete JSON or digest key and string display label.
Short values keep their existing identities and labels, while large values
retain the payload-copy reduction without an arbitrary truncation limit.
Commit literal values with canonical JSON SHA-256 in semantic role keys
and use a type label for strings. Preserve complete values, provenance and
literal queries while avoiding two payload copies in each string node.
Verify real compiled CLI/default stdio MCP, typed union seeds, empty
strings and trace continuation with a large source-owned fixture.
Refs #723
BREAKING CHANGE: Newly produced semantic literal node IDs use
value-sha256 role keys, and string labels read "string literal". Read exact
values from properties.value and obtain node IDs from the selected parent
graph. Previously stored Evidence and its original IDs remain valid.
* fix(javascript): preserve uncertainty after references escape to calls
* fix(javascript): track iterator root escapes and preserve static captures
* fix(javascript): scope comparison unknowns to their evidence
* fix(javascript): track parameter origins at function body entry
---------
Co-authored-by: morluto <76467478+morluto@users.noreply.github.com>
Intern shared provenance in a graph-scoped context registry while retaining exact locations on every fact. Semantic traces carry their referenced context subset, and portable graph validation rejects stale or dangling commitments.
BREAKING CHANGE: Semantic graph facts now store evidence context IDs and locations. Graph and semantic trace results require an inline evidence_contexts table.
Verify selected files through a nonblocking opened handle before reading. Preserve regular-file symlinks and return actionable CLI/MCP diagnostics without publishing output.
Co-authored-by: YouWish <29498139+Y0UW1SH@users.noreply.github.com>
Deliver complete Evidence directly through MCP with required nullable analysis profiles and immutable per-server delivery settings. Bind selected environments at construction and require typed cleanup outcomes with retained retry ownership.
Remove test-only routing, duplicate session and snapshot metadata, producer-field repairs, and ambiguous provider arguments. Separate artifact byte identity from occurrence classification and retain typed source-map and partial native facts across CLI, MCP, and verifier consumers.
BREAKING CHANGE: obsolete Evidence envelopes, session aliases, incomplete snapshots, and missing normalized producer facts are no longer accepted.
Add explicit summary, facet, item and paged views of retained analysis Evidence without repeating analysis. Preserve captured observations, graph validation, artifact identity, coverage and complete default results.
Fixes#1050
Verified with focused source, CLI, pinned-SDK schema and MCP tests, serial static checks, and one complete native Windows Notion ASAR workflow. Real Hopper/Ghidra verification was not performed for this provider-independent projection change.
Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com>
* fix(hopper): report unavailable procedure body coverage
* refactor!: simplify runtime tools and remove replay engines
Keep direct inspection, capture, and comparison tools. Bind handlers to named contracts and let agents compose experiments with commands and local fixture servers.
BREAKING CHANGE: Remove controlled replay, Node characterization, finite replay-machine, managed runtime planning, and redundant string-tracing tools. Retire process replay, shims, reactive scenarios, custom checkpoints, and active browser replay and origin-scope inputs.
Expose one plan/execute replay contract through both CLI and MCP with exact source, input, runtime, sandbox, limit, and export commitments.
Run selected ESM and extracted CommonJS/Rspack factories in a disposable Linux x64 Bubblewrap namespace with a content-addressed Node ELF closure, architecture-checked seccomp, delegated systemd cgroup limits, bounded protocol capture, cancellation, and observable cleanup.
Preserve left and right observations as Evidence, derive differential comparisons without erasing unknowns, add optional separately authorized reproducers, and fail closed on stale plans or unavailable host boundaries.
Add source-owned parser, sanitizer, clipboard, denial, timeout, OOM, protocol-forgery, and cancellation coverage; a real Linux verifier and workflow; regenerated catalogs and TypeDoc; and updated the packaged REA analysis skill for the 83-tool inventory.
morluto