* fix(reference): report entries beyond the path limit as I/O failures
Reference-source traversal joins each child onto the root path. A valid
tree whose nested entries exceed the platform's absolute path limit
(PATH_MAX 1024 on macOS) makes lstat fail with ENAMETOOLONG. The
reader's filesystem error allow-list lacked that code, so
filesystemFailureDetail returned undefined and the native rejection
escaped both readReferenceSource and importReferenceSource instead of
becoming the existing failed `io` entry.
Add ENAMETOOLONG to the allow-list, matching the JavaScript application
reader's list. Readable siblings stay in the graph and the unreachable
entry is recorded with its OS message.
Fixes#2652
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
* test(reference): assert the imported graph keeps readable and failed entries
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
* fix(process): report no remaining time after a provider deadline fires
Node timers can fire while performance.now() is still a fraction of a
millisecond short of the monotonic deadline. ProviderStartupDeadline then
reported interruption "timeout" and an aborted signal while remainingMs()
returned ceil(0.x) = 1, so polling loops guarded by remainingMs() > 0
(Hopper and Ghidra startup) could run past an elapsed deadline, and the
real-timer test "aborts a bounded wait when its real monotonic deadline
expires" failed intermittently in CI (expected 1 to be 0).
Once the deadline's own timer has classified a timeout, report zero
remaining time. A deterministic regression test fires the timer with the
monotonic clock 0.4 ms short of the deadline.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
* fix(reference): preserve path limit entry uncertainty
* fix(reference): preserve unknown entry failures and identity
* fix(reference): type unknown-kind exclusions and keep them out of symlink counts
The metadata-failure path offers "unknown" to exclusion predicates, but
the predicate type only admitted concrete kinds, which broke the build.
Directory-only secret and ignore rules now also match an unknown-kind
entry (it may be a directory), and the summary counts unknown entries
separately instead of as symlinks.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
---------
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
Co-authored-by: morluto <76467478+morluto@users.noreply.github.com>
Co-authored-by: Codex <codex@users.noreply.github.com>
Normalize path facts once at the owning filesystem boundary, preserve caller spelling and unavailable inventory members, and retain typed read failures. Record exclusion entry kinds so only proven directories can establish descendant symlink targets; omitted legacy kinds stay unknown.
Reviewed fixes include #1969, #2642, #2759, and #2994.
Validation: 26 reference graph source tests passed; prior artifact checks passed 275 tests with one Windows-only skip. Updated compiled import workflows are included in final validation after regeneration.
Record the exact matching pattern and distinguish project, default, caller, and configured-sensitive exclusions without changing ignore ordering. Include that provenance in graph commitments and validate the contract through compiled CLI and MCP consumers.
BREAKING CHANGE: Pattern-based reference graph exclusions require pattern and distinguish project-ignored and default-ignored reasons. Re-import saved graphs that omit matching patterns.
* fix(reference): join internal symlink targets with the inventory NFC normalizer
checkSymlinks resolved an internal symlink target with bare
posix.normalize and looked the result up in the inventoried path set.
A target that a filesystem reports in NFD (macOS readlink commonly
does) joined to an NFD spelling while the inventory holds NFC, so
validation reported "Internal symlink target must resolve to an
inventoried entry" for a target the inventory actually contains.
Route the join through normalizeJoinedLogicalPath, the same inventory
identity normalizer #1513 applied to the runtime, HTML/module, and
import joins from #1488. The feature-seed NFKC query fold stays a
query.
Refs #1488
* fix(reference): preserve source spelling during symlink lookup
---------
Co-authored-by: morluto <76467478+morluto@users.noreply.github.com>
Remove forwarding wrappers and shadow aliases, migrate callers and verification scripts to their owners, and share one exhaustive semantic resource-bound projection.
Compare complete function dossiers directly, remove unreachable truncation and collection wrappers, and preserve deterministic Unicode ordering. Require real external reference targets instead of display placeholders.
BREAKING CHANGE: function comparison results no longer advertise the unreachable truncated state or counter.
* fix: emit v-mode-compatible patterns for tool schemas
Character classes in emitted patterns carried unescaped '-', '/' and '['. Annex-B and u-mode accept them, so REA's own Zod validation (u) and every u-based validator never saw a defect, but v-mode rejects ClassSetSyntaxCharacters and Ruby rejects [^s[]]. With 6.1.0 tools/list, 117 pattern fields across 11 tools were rejected under v.
The characters are escaped as \x2d, \x2f, \x5b and \x5d rather than \-/\//\[, because oxlint --fix removes an escaped '-' inside a character class as a useless escape, so an escape-only change does not survive the pre-commit hook. \x2d-style escapes are valid under Annex B, u and v, are matched identically, and are not useless-escape candidates.
22 pattern literals in 18 files are touched; no other token changes.
* fix: replace the Zod offset pattern and guard the advertised catalog
The offset datetime site projected Zod's offset class as [ +- ], which no escape in this repository's sources can reach, so evaluate_reconstruction_coverage stayed unreachable for exactly the clients this change targets. It now uses offsetDateTimeSchema in src/domain/offsetDateTime.ts: the same accepted set with the offset class escaped as [ +\x2d ].
Adds tests/boundary/mcp/advertisedPatternsVMode.test.ts, which performs the real tools/list projection, traverses every advertised input and output schema, compiles each pattern under v, and asserts the inventory it walked so a silent traversal collapse fails instead of passing vacuously.
* refactor(domain): consolidate canonical ordering and digest helpers
Single owner for code-point ordering (domain/canonicalOrdering.ts)
and canonical JSON digests (domain/comparisonSemantics.ts). Delete
all local compareCodePoints/compareText/digestCanonical duplicates
and migrate every importer. No re-export shims.
* fix(ci): allow slower real browser startup
morluto